Home > Archive>Volume 27, Issue 1, 2019 >36-44. DOI:10.11926/jtsb.3909
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Adaptive Evolutionary Analysis of the rbcL Gene from Compsopogon (Rhodophyta)
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    Abstract:

    In order to reveal the chloroplast gene and adaptive evolution characters of Rhodophyta, the 17 rbcL genes of Compsopogon and the similar group of freshwater red algae were selected, the bioinformatics of proteins encoded by rbcL genes of Compsopogon were analyzed by using software PAML4.9, and the selection sites of genes were detected by using branch model, site model and branch-site models. The results showed that the secondary structure of protein encoded by rbcL of Compsopogon was mainly composed of α helix and β folding, so its structure was very stable. The phylogenetic tree with the maximum likelihood method showed that the inner group had only one species, could be divided into three small branches, and they had obvious geographical distribution. No significant positively selected sites were detected under all three evolutionary models, indicating that most of the sites were under negative selection pressure. Therefore, there is no adaptive evolution of rbcL gene in Compsopogon.

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韩雨昕,南芳茹,巩超彦,冯佳,吕俊平,刘琪,谢树莲.弯枝藻属rbcL基因的适应性进化分析[J].热带亚热带植物学报,2019,27(1):36~44

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History
  • Received:March 19,2018
  • Revised:April 29,2018
  • Online: January 19,2019
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