基于叶绿体DNA atpB-rbcL区序列探讨石蒜属种间系统发育关系
作者:
作者单位:

内蒙古农业大学,内蒙古农业大学,中国林科院亚热带林业研究所,内蒙古农业大学

基金项目:

国家自然科学基金项目(30960059)资助


Investigation on the Phylogenetic Relationships of Lycoris (Amaryllidaceae) Based on Chloroplast atpB-rbcL Sequences
Author:
Affiliation:

College of Agronomy ,Inner Mongolia Agriculture University,College of Agronomy ,Inner Mongolia Agriculture University,Research Institute of Subtropical Forestry,Chinese Academy of Forestry Sciences,College of Agronomy ,Inner Mongolia Agriculture University

  • 摘要
  • | |
  • 访问统计
  • |
  • 参考文献 [30]
  • |
  • 相似文献 [20]
  • | | |
  • 文章评论
    摘要:

    为了探讨石蒜属(Lycoris Herb.)植物的种间系统发育关系,对石蒜属植物95 份材料,包括15种4变种及2个人工杂种的叶绿体DNA atpB-rbcL间隔区进行了测序,结合花部形态和核型特征,探讨了石蒜属种间系统关系及其可能的杂交起源。系统发育树的分析结果表明,矮小石蒜(L. radiata var. pumila)和换锦花(L. sprengeri)与2个人工杂交种、麦秆石蒜(L. straminea)、江苏石蒜(L. houdyshelii)、短蕊石蒜(L. caldwellii)和乳白石蒜(L. albiflora)具有密切的亲缘关系。atpB-rbcL序列揭示的石蒜属种间关系与染色体核型的分类结果部分一致,主要表现在具有近端部着丝粒(A)染色体的种与具有中部(M)和端部(T)着丝粒染色体的种各成一支,与形态和染色体分类结果一致;不同之处在于具有中部、端部和近端部着丝粒染色体的种分散在两个主要分支内,进一步验证了具有中部、端部和近端部3 种着丝粒类型染色体组的石蒜,如麦秆石蒜、江苏石蒜、短蕊石蒜和乳白石蒜等,是杂交起源的假设,结合2 个人工杂交种分析,揭示了短蕊石蒜和乳白石蒜的近端部着丝粒染色体来源于换锦花;麦秆石蒜和江苏石蒜近端部着丝粒染色体来源于矮小石蒜。

    Abstract:

    In order to understand the phylogenetic relationships in genus Lycoris, the atpB-rbcL spacer regions of chloroplast DNA (cpDNA) were sequenced from selected 95 taxa, including 15 species, 4 varieties and 2 hybrids. The results showed that 95 taxa were clearly classified into two main clades from phylogenetic tree based on atpB-rbcL sequences. There were close relationship among L. radiata var. pumila, L. sprengeri, L. caldwellii, L. albiflora, L. straminea and L. houdyshelii. The interspecific relationship revealed by atpB-rbcL sequences is partially consistent with morphological and karyotype classification. The species with subtelocentric chromosome grouped Clade I, and the species with telocentric and metacentric chromosomes formed Clade II. The species with subtelocentric, telocentric and metacentric chromosomes dispersed in the two clades, it verified the hypothesis that Lycoris species with subtelocentric, telocentric and metacentric chromosomes were hybrid origin. Combining the data from two artificial hybrids, atpB-rbcL sequence analysis also revealed that subtelocentric chromosomes of L. albiflora and L. caldwellii derived from L. sprengeri, while those of L. houdyshelii and L. straminea from L. radiata var. pumila.

    参考文献
    [1] Xu Y, Hu Z B, Huang X L, et al. Lycoris Herb. [M]// Pei J, Ding Z Z. Flora Reipublicae Popularis Sinicae, Tomus 16(1). Beijing: Science Press, 1985: 18-27. 徐垠, 胡之壁, 黄秀兰, 等. Lycoris Herb. [M]// 裴鉴, 丁志遵. 中 国植物志 第16卷第1分册. 北京: 科学出版社, 1985: 18-27.
    [2] Wang R S. The ecogeography concerning genus Lycoris [J]. J SW For Coll, 1990, 10(1): 41-48. 王仁师. 关于石蒜属(Lycoris)的生态地理 [J]. 西南林学院学报, 1990, 10(1): 41-48.
    [3] Shao J Z, Yang J G, Zhang D C, et al. The discovery of diploid Lycoris radiata (L'Hér.) Herb. from Anhui [J]. Acta Phytotaxon Sin, 1994, 32(6): 549-552. 邵建章, 杨积高, 张定成, 等. 二倍体石蒜在安徽发现 [J]. 植物 分类学报, 1994, 32(6): 549-552.
    [4] Kurita S. Variation and evolution in the karyotype of Lycoris, Amaryllidaceae: I. General karyomorphological characteristics of the genus [J]. Cytologia, 1986, 51(4): 803-815.
    [5] Zhou S B, Yu B Q, Luo Q, et al. Karyotypes of six populations of Lycoris radiata and discovery of the tetraploid [J]. Acta Phytotaxon Sin, 2007, 45(4): 513-522. 周守标, 余本祺, 罗琦, 等. 六个石蒜居群的核型及四倍体石蒜 的发现 [J]. 植物分类学报, 2007, 45(4): 513-522.
    [6] Hus P S, Kurita S, Yu Z Z, et al. Synopsis of the genus Lycoris (Amaryllidaceae) [J]. Sida, 1994, 16(2): 301-331.
    [7] Williams J G K, Kubelik A R, Livak K J, et al. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers [J].Nucl Acids Res, 1990, 18(22): 6531-6535.
    [8] Roh M S, Kurita S, Zhao X Y, et al. Identification and classification of the genus Lycoris using molecular markers [J]. J Kor Hort Sci, 2002, 43(2): 120-132.
    [9] Nie L W, Zhang D C, Zhang H J, et al. A study on three isozymes in plant of Lycoris Herb. [J]. J Biol, 2000, 17(3): 19-22. 聂刘旺, 张定成, 张海军, 等. 安徽产石蒜属植物三种酶同工酶 的分析 [J]. 生物学杂志, 2000, 17(3): 19-22.
    [10] Zhang L, Cai Y M, Zhu G Q, et al. Analysis of the inter-specific relationships on Lycoris (Amaryllidaceae) by use of RAPD [J]. Acta Genet Sin, 2002, 29(10): 915-921. 张露, 蔡友铭, 诸葛强, 等. 石蒜属种间亲缘关系RAPD分析[J]. 遗传学报, 2002, 29(10): 915-921.
    [11] Huang X A, Dong M F, Yan X Y, et al. Analysis of genetic relationships among species of Lycoris Herb. by AFLP markers[J]. Chin Trad Herb Drugs, 2011, 42(1): 148-152. 黄想安, 董美芳, 阎学燕, 等. 石蒜属种间亲缘关系AFLP分析[J]. 中草药, 2011, 42(1): 148-152.
    [12] Manen J F, Natali A. Comparison of the evolution of rbcL and atpB-rbcL noncoding spacer sequences in a recent plant group, the tribe Rubieae (Rubiaceae) [J]. J Mol Evol, 1995, 41(6): 920-927.
    [13] Manen J F, Natali A. The chloroplast atpB-rbcL spacer in Rubiaceae [M]// Robbrecht E, Puff C, Smets E. Second International Rubiaceae Conference Proceedings (Opera Botanica Belgica, Vol. 7). Brussels: National Botanic Garden of Belgium, 1996: 51-57.
    [14] Chiang T Y, Schaal B A, Peng C I. Molecular evolution and phylogeny of the atpB-rbcL spacer of chloroplast DNA in the true mosses [J]. Genome, 2000, 43(3): 417-426.
    [15] Chiang T Y, Schaal B A. Molecular evolution of the atpBrbcL noncoding spacer of chloroplast DNA in the moss family Hylocomiaceae [J]. Bot Bull Acad Sin, 2000, 41(3): 85-92.
    [16] Yun J H, Sun S, Peng F, et al. Genetic variations in trnL-F sequence and phylogenetic clustering of Lycoris species [J]. China J Chin Mat Med, 2008, 33(13): 1523-1527. 袁菊红, 孙视, 彭峰, 等. 石蒜属叶绿体trnL-F序列的变异与系 统聚类分析 [J]. 中国中药杂志, 2008, 33(13): 1523-1527.
    [17] Quan M H, Ou L J, She C W, et al. Analysis of interspecific relationships in Lycoris Herb. based on trnH-psbA sequence [J]. Acta Hort Sin, 2011, 38(8): 1589-1594. 全妙华, 欧立军, 佘朝文, 等. 中国石蒜属种间关系的trnHpsbA 序列分析 [J]. 园艺学报, 2011, 38(8): 1589-1594.
    [18] Lin J Z, Yu Z Z, Hsu P S. Hybridization and breeding of Lycoris[M]// He S A. Proceedings of the International Symposium on Botanical Garden. Nanjing: Jiangsu Science & Technology Publishing House, 1990: 557-568.
    [19] Doyle J J, Doyle J L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue [J]. Phytochem Bull, 1987, 19(1): 11-15.
    [20] Chiang T Y, Schaal B A, Peng C I. Universal primers for amplification and sequencing a noncoding spacer between the atpB and rbcL genes of chloroplast DNA [J]. Bot Bull Acad Sin, 1998, 39(4): 245-250.
    [21] Swofford D L. PAUP*: Phylogenetic Analysis Using Parsimony (and other methods) 4.0 Beta [CD]. Sunderland (MA): Sinauer Associates, 2002.
    [22] Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees [J]. Mol Biol Evol, 1987, 4(4): 406-425.
    [23] Kurita S, Hsu P S. Hybrid complexes in Lycoris, Amaryllidaceae[J]. Amer J Bot, 1996, 83(6, Suppl.): 207.(Abstract)
    [24] Xia Q P, Yu B Q, Zhou S B. Study on evolution relationships of different species in lycorisand different populations in Lycoris radiate based on POD isozyme [J]. J Anhui Norm Univ (Nat Sci), 2011, 34(2): 154-159. 夏齐平, 余本祺, 周守标. 基于POD同工酶对石蒜属种间和石 蒜居群间进化关系的研究 [J]. 安徽师范大学学报: 自然科学 版, 2011, 34(2): 154-159.
    [25] Rieseberg L H. Homology among RAPD fragments in interspecific comparisons [J]. Mol Ecol, 1996, 5(1): 99-105.
    [26] Wolfe A D, Liston A. Contributions of PCR-based methods to plant systematics and evolutionary biology [M]// Soltis D E, Soltis P S, Doyle J J. Molecular Systematics of Plants II: DNA Sequencing. New York, USA: Kluwer Academic Publishers, 1998: 43-86.
    [27] Kurita S. Chromosome evolution in Lycoris [J]. Proc Jpn Soc Plant Taxon, 1987, 4(1): 8-9.
    [28] Kurita S. Variation and evolution in the karyotype of Lycoris, Amaryllidaceae: VII. Modes of karyotype alteration within species and probable trend of karyotype evolution in the genus Lycoris [J]. Cytologia, 1988, 53(2): 323-335.
    [29] Lee N S, Kim M, Lee B S, et al. Isozyme evidence for the allotriploid origin of Lycoris flavescens (Amaryllidaceae) [J]. Plant Syst Evol, 2001, 227(3/4): 227-234.
    [30] Liu Y, Hsu P S. A study on karyotypes of the genus Lycoris [J]. Acta Phytotaxon Sin, 1989, 27(4): 257-264. 刘琰, 徐炳声. 石蒜属的核型研究 [J]. 植物分类学报, 1989, 27(4): 257-264.
    引证文献
    网友评论
    网友评论
    分享到微博
    发 布
引用本文

魏磊,庞磊,杨旭,史树德.基于叶绿体DNA atpB-rbcL区序列探讨石蒜属种间系统发育关系[J].热带亚热带植物学报,2013,21(2):109~115

复制
分享
文章指标
  • 点击次数:2544
  • 下载次数: 3591
  • HTML阅读次数: 0
  • 引用次数: 0
历史
  • 收稿日期:2012-04-17
  • 最后修改日期:2012-07-29
  • 录用日期:2012-10-15
  • 在线发布日期: 2013-04-03
文章二维码